nvim: Modify jupyter notebook config

nvim/.config/nvim/lua/disabled_plugins/jupytext.lua

@@ -1,6 +0,0 @@
-return {
-    {
-        "GCBallesteros/jupytext.nvim",
-        config = true
-    }
-}

nvim/.config/nvim/lua/plugins/molten.lua

@@ -1,30 +1,87 @@
 return {
-    {
+    { -- Ability to show images in the output
-        "benlubas/molten-nvim",
+        "3rd/image.nvim",
-        build = ":UpdateRemotePlugins",
+        opts = {}
-        version = "v1.7.0",
+    }, { -- Use LSP in markdown files
+        "quarto-dev/quarto-nvim",
+        dependencies = {"jmbuhr/otter.nvim", "nvim-treesitter/nvim-treesitter"},
+        ft = {"quarto", "markdown"},
         init = function()
-            vim.keymap.set("n", "<localleader>mi", ":MoltenInit<CR>", {
+            vim.api.nvim_create_autocmd('FileType', {
-                silent = true,
+                pattern = 'markdown',
-                desc = "Initialize the plugin"
+                callback = function()
-            })
+                    require("quarto").activate()
-            vim.keymap.set("n", "<localleader>e", ":MoltenEvaluateOperator<CR>", {
+                end
-                silent = true,
-                desc = "run operator selection"
-            })
-            vim.keymap.set("n", "<localleader>rl", ":MoltenEvaluateLine<CR>", {
-                silent = true,
-                desc = "evaluate line"
-            })
-            vim.keymap.set("n", "<localleader>rr", ":MoltenReevaluateCell<CR>", {
-                silent = true,
-                desc = "re-evaluate cell"
-            })
-            vim.keymap.set("v", "<localleader>r", ":<C-u>MoltenEvaluateVisual<CR>gv", {
-                silent = true,
-                desc = "evaluate visual selection"
             })
 
+            -- local runner = require("quarto.runner")
+            -- vim.keymap.set("n", "<localleader>rc", runner.run_cell, {
+            --     desc = "run cell",
+            --     silent = true
+            -- })
+            -- vim.keymap.set("n", "<localleader>ra", runner.run_above, {
+            --     desc = "run cell and above",
+            --     silent = true
+            -- })
+            -- vim.keymap.set("n", "<localleader>rA", runner.run_all, {
+            --     desc = "run all cells",
+            --     silent = true
+            -- })
+            -- vim.keymap.set("n", "<localleader>rl", runner.run_line, {
+            --     desc = "run line",
+            --     silent = true
+            -- })
+            -- vim.keymap.set("v", "<localleader>r", runner.run_range, {
+            --     desc = "run visual range",
+            --     silent = true
+            -- })
+            -- vim.keymap.set("n", "<localleader>RA", function() runner.run_all(true) end, {
+            --     desc = "run all cells of all languages",
+            --     silent = true
+            -- })
+        end,
+        opts = {
+            lspFeatures = {
+                languages = {"r", "python", "rust", "julia"},
+                chunks = "all",
+                diagnostics = {enabled = true, triggers = {"BufWritePost"}},
+                completion = {enabled = true}
+            },
+            keymap = {
+                hover = "H",
+                definition = "gd",
+                rename = "<leader>rn",
+                references = "gr",
+                format = "<leader>gf"
+            },
+            codeRunner = {enabled = true, default_method = "molten"}
+        }
+    }, { -- Convert ipynb to markdown and back
+        "GCBallesteros/jupytext.nvim",
+        opts = {
+            style = "markdown",
+            output_extension = "md",
+            force_ft = "markdown"
+        }
+    }, { -- Interactive code evaluation
+        "benlubas/molten-nvim",
+        version = "^1.0.0", -- use version <2.0.0 to avoid breaking changes
+        build = ":UpdateRemotePlugins",
+        init = function()
+            vim.keymap.set("n", "<localleader>mi", ":MoltenInit<CR>",
+                           {silent = true, desc = "Initialize the plugin"})
+            vim.keymap.set("n", "<localleader>e", ":MoltenEvaluateOperator<CR>",
+                           {silent = true, desc = "run operator selection"})
+            vim.keymap.set("n", "<localleader>rl", ":MoltenEvaluateLine<CR>",
+                           {silent = true, desc = "evaluate line"})
+            vim.keymap.set("n", "<localleader>rr", ":MoltenReevaluateCell<CR>",
+                           {silent = true, desc = "re-evaluate cell"})
+            vim.keymap.set("v", "<localleader>r",
+                           ":<C-u>MoltenEvaluateVisual<CR>gv",
+                           {silent = true, desc = "evaluate visual selection"})
+
+            vim.g.molten_image_provider = "image.nvim"
+
             vim.g.molten_auto_open_output = false
             vim.g.molten_virt_text_output = true
             vim.g.molten_virt_text_max_lines = 32