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Implement fetching citing works

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This commit is contained in:
Andreas Tsouchlos 2026-01-01 06:08:03 +02:00
parent 143e177b8c
commit 0276bfe515
2 changed files with 177 additions and 65 deletions
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51
src/app.rs
View File

@ -16,8 +16,8 @@ use tokio::{
use crate::{
app::run::Action,
literature::{
Publication, SnowballingHistory, get_publication_by_id,
get_references_stream,
Publication, SnowballingHistory, get_citing_works_stream,
get_publication_by_id, get_references_stream,
},
status_error, status_info,
};
@ -202,6 +202,46 @@ impl App {
action_tx.send(SeedingAction::ClearInput.into())
}
#[action]
fn fetch_citing_works(
&self,
action_tx: &'static UnboundedSender<Action>,
) -> Result<(), SendError<Action>> {
status_info!(action_tx, "Fetching citing works...")?;
let included = self.state.history.get_all_included();
tokio::spawn(async move {
let stream = get_citing_works_stream(
included,
"an.tsouchlos@gmail.com".to_string(),
);
tokio::pin!(stream);
while let Some(result) = stream.next().await {
match result {
Ok(vals) => {
for val in vals {
let _ = action_tx
.send(GlobalAction::AddPendingPub(val).into());
}
}
Err(err) => {
let _ = status_error!(
action_tx,
"Error loading citing works: {}",
err
);
}
}
}
let _ = status_info!(action_tx, "Done fetching citing works");
});
Ok(())
}
#[action]
fn fetch_references(
&self,
@ -212,11 +252,13 @@ impl App {
let included = self.state.history.get_all_included();
tokio::spawn(async move {
let mut stream = get_references_stream(
let stream = get_references_stream(
included,
"an.tsouchlos@gmail.com".to_string(),
);
tokio::pin!(stream);
while let Some(result) = stream.next().await {
match result {
Ok(vals) => {
@ -278,6 +320,9 @@ impl App {
(Tab::Snowballing, KeyCode::Char(' ')) => {
action_tx.send(GlobalAction::FetchReferences.into())
}
(Tab::Snowballing, KeyCode::Char('c')) => {
action_tx.send(GlobalAction::FetchCitingWorks.into())
}
_ => Ok(()),
}
}

155
src/literature.rs
View File

@ -3,7 +3,6 @@ use futures::{StreamExt, future::BoxFuture, stream};
use html_escape::decode_html_entities;
use serde::{Deserialize, Serialize};
use std::{collections::HashMap, fmt::Display, sync::Arc};
use tokio::task::JoinSet;
use unicode_general_category::{GeneralCategory, get_general_category};
#[derive(Serialize, Deserialize, Debug, Clone)]
@ -145,9 +144,15 @@ impl Publication {
}
}
#[derive(Serialize, Deserialize, Debug)]
pub struct OpenAlexResponse {
pub results: Vec<Publication>,
#[derive(Deserialize)]
struct OpenAlexResponse {
results: Vec<Publication>,
meta: Meta,
}
#[derive(Deserialize)]
struct Meta {
next_cursor: Option<String>,
}
#[derive(Debug)]
@ -188,7 +193,49 @@ pub async fn get_publication_by_id(
.map_err(|_| Error::ApiError(url))
}
// TODO: Get all publications, not just the first 25
// TODO: Rename this
fn get_cited_works(
id: String,
email: Arc<String>,
client: reqwest::Client,
) -> impl futures::Stream<Item = Result<Vec<Publication>, Error>> {
let initial_state = Some("*".to_string());
stream::unfold(initial_state, move |cursor| {
let email = email.clone();
let client = client.clone();
let id = id.clone();
async move {
let current_cursor = cursor?;
let url = format!(
"https://api.openalex.org/works?filter=cited_by:{}&mailto={}&cursor={}",
id, email, current_cursor
);
let response = client
.get(&url)
.header("User-Agent", "Rust-OpenAlex-Client/1.0")
.send()
.await
.map_err(|_| Error::ApiError(url.clone()))
.ok()?
.json::<OpenAlexResponse>()
.await
.ok()?;
let next_cursor = if response.results.is_empty() {
None
} else {
response.meta.next_cursor
};
Some((Ok(response.results), next_cursor))
}
})
}
pub fn get_references_stream(
publications: Vec<Publication>,
email: String,
@ -219,7 +266,8 @@ pub fn get_references_stream(
// Get references using the referenced_works field
let stream1 = stream::iter(referenced_work_urls).map({
let stream1 = stream::iter(referenced_work_urls)
.map({
let (email, client) = (email.clone(), client.clone());
move |url| {
let (email, client) = (email.clone(), client.clone());
@ -231,56 +279,75 @@ pub fn get_references_stream(
});
fut
}
});
})
.buffer_unordered(10);
// Search for references using API calls
let stream2 = stream::iter(publication_ids).map(move |id| {
let stream2 = stream::iter(publication_ids)
.map(move |id| get_cited_works(id, email.clone(), client.clone()))
.flatten();
// Combine the two streams
stream::select(stream1, stream2)
}
// TODO: Rename this
fn get_citing_works(
id: String,
email: Arc<String>,
client: reqwest::Client,
) -> impl futures::Stream<Item = Result<Vec<Publication>, Error>> {
let initial_state = Some("*".to_string());
stream::unfold(initial_state, move |cursor| {
let email = email.clone();
let client = client.clone();
let id = id.clone();
async move {
let current_cursor = cursor?;
let url = format!(
"https://api.openalex.org/works?filter=cites:{}&mailto={}",
id, email
"https://api.openalex.org/works?filter=cites:{}&mailto={}&cursor={}",
id, email, current_cursor
);
let client = client.clone();
let fut: BoxFuture<'static, Result<Vec<Publication>, Error>> =
Box::pin(async move {
client
.get(url.clone())
let response = client
.get(&url)
.header("User-Agent", "Rust-OpenAlex-Client/1.0")
.send()
.await
.map_err(|_| Error::ApiError(url.clone()))?
.map_err(|_| Error::ApiError(url.clone()))
.ok()?
.json::<OpenAlexResponse>()
.await
.map(|response| response.results)
.map_err(|_| Error::ApiError(url.clone()))
});
fut
});
.ok()?;
// Combine the two streams
let next_cursor = if response.results.is_empty() {
None
} else {
response.meta.next_cursor
};
stream::select(stream1, stream2).buffer_unordered(10)
Some((Ok(response.results), next_cursor))
}
})
}
// // TODO: Get all papers, not just the first page
// pub async fn get_citing_papers(
// target_id: &str,
// email: &str,
// ) -> Result<Vec<Publication>, Error> {
// let url = format!(
// "https://api.openalex.org/works?filter=cites:{}&mailto={}",
// target_id, email
// );
//
// let client = reqwest::Client::new();
// let response = client
// .get(url)
// .header("User-Agent", "Rust-OpenAlex-Client/1.0")
// .send()
// .await?
// .json::<OpenAlexResponse>()
// .await?;
//
// Ok(response.results)
// }
pub fn get_citing_works_stream(
publications: Vec<Publication>,
email: String,
) -> impl futures::Stream<Item = Result<Vec<Publication>, Error>> {
let email = Arc::new(email);
let client = reqwest::Client::new();
let ids: Vec<String> = publications
.iter()
.map(|p| p.id.trim_start_matches("https://openalex.org/").to_string())
.collect();
stream::iter(ids)
.map(move |id| get_citing_works(id, email.clone(), client.clone()))
.flatten()
}