Comment out response to reviewers

README.md

@@ -1,6 +1,6 @@
 # ba-letter
 
-Repository containing latex source for the Bachelor's Thesis paper.
+Repository containing the latex source for the bachelor's thesis letter.
 
 After cloning, make sure to initialize the submodules containing the dependencies:
 ```bash
@@ -11,17 +11,24 @@ $ git submodule update --init
 
 ### Build on host
 
+For a list of dependencies consult one of the dockerfiles in the `dockerfiles` directory. Build document:
+
 ```bash
 $ make
 ```
 
+After compiling, the PDF can be found in the `build` directory.
+
 ### Build using docker
 
+Be warned that `texlive` installations can take some time.
+Building the docker image may take a few minutes.
+
 1. Build docker image
     ```bash
     $ docker build -f dockerfiles/Dockerfile.alpine . -t ba-letter
     ```
-2. Build examples
+2. Build document
     ```bash
     $ docker run --rm -v $PWD:$PWD -w $PWD -u `id -u`:`id -g` ba-letter make
     ```

dockerfiles/Dockerfile.alpine

@@ -2,6 +2,13 @@ FROM alpine:3.19
 
 RUN apk update && apk upgrade
 RUN apk add make texlive texmf-dist-pictures
-RUN apk add texmf-dist-publishers
-RUN apk add texmf-dist-science
-RUN apk add texmf-dist-fontsextra
+RUN apk add texmf-dist-publishers texmf-dist-science texmf-dist-fontsextra texmf-dist-latexextra
+RUN apk add biber texmf-dist-bibtexextra
+
+# The 'bbm' package insists on generating stuff in the home directory. In
+# order to guarantee access to the home directory no matter the user the
+# docker container is run with, create a temporary one anyone can write to
+RUN mkdir /tmp/home
+RUN chmod -R 777 /tmp/home
+ENV HOME=/tmp/home
+

dockerfiles/Dockerfile.arch

@@ -0,0 +1,25 @@
+FROM archlinux:latest
+
+RUN pacman-key --init
+RUN pacman-key --populate archlinux
+RUN pacman -Sy archlinux-keyring --noconfirm && pacman -Su --noconfirm
+
+RUN pacman -Syu --noconfirm
+RUN pacman -S make perl texlive texlive-binextra texlive-pictures --noconfirm
+RUN pacman -S texlive-publishers texlive-mathscience texlive-fontsextra texlive-latexextra --noconfirm
+RUN pacman -Syu biber texlive-bibtexextra --noconfirm
+
+# The 'bbm' package insists on generating stuff in the home directory. In
+# order to guarantee access to the home directory no matter the user the
+# docker container is run with, create a temporary one anyone can write to
+RUN mkdir /tmp/home
+RUN chmod -R 777 /tmp/home
+ENV HOME=/tmp/home
+
+# Generate font necessary for \mathbbm{1}
+RUN mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 bbm10
+RUN chmod -R 777 /tmp/home
+
+# For some reason simply installing 'biber' does not set the path
+ENV PATH="${PATH}:/usr/bin/vendor_perl"
+

dockerfiles/Dockerfile.archlinux

@@ -1,9 +0,0 @@
-FROM archlinux:latest
-
-RUN pacman-key --init
-RUN pacman-key --populate archlinux
-RUN pacman -Sy archlinux-keyring --noconfirm && pacman -Su --noconfirm
-
-RUN pacman -Syu --noconfirm
-RUN pacman -S make perl texlive texlive-binextra texlive-pictures --noconfirm
-RUN pacman -S texlive-publishers texlive-mathscience texlive-fontsextra --noconfirm

dockerfiles/Dockerfile.ubuntu

@@ -4,4 +4,13 @@ ARG DEBIAN_FRONTEND=noninteractive
 
 RUN apt update -y && apt upgrade -y
 RUN apt install make texlive latexmk texlive-pictures -y
-RUN apt install make texlive-publishers texlive-science texlive-fonts-extra -y
+RUN apt install texlive-publishers texlive-science texlive-fonts-extra texlive-latex-extra -y
+RUN apt install biber texlive-bibtex-extra -y
+
+# The 'bbm' package insists on generating stuff in the home directory. In
+# order to guarantee access to the home directory no matter the user the
+# docker container is run with, create a temporary one anyone can write to
+RUN mkdir /tmp/home
+RUN chmod -R 777 /tmp/home
+ENV HOME=/tmp/home
+

letter.bib

@@ -0,0 +1,115 @@
+@ARTICLE{ADMM,
+  author={Barman, Siddharth and Liu, Xishuo and Draper, Stark C. and Recht, Benjamin},
+  journal={Trans. Inf. Theory}, 
+  title={Decomposition Methods for Large Scale LP Decoding}, 
+  year={2013},
+  volume={59},
+  number={12},
+  pages={7870-7886},
+%  doi={10.1109/TIT.2013.2281372}
+}
+
+@ARTICLE{feldman_paper,
+  author={Feldman, J. and Wainwright, M.J. and Karger, D.R.},
+  journal={IEEE Trans. Inf. Theory}, 
+  title={Using linear programming to Decode Binary linear codes}, 
+  year={2005},
+  volume={51},
+  number={3},
+  pages={954-972},
+%  doi={10.1109/TIT.2004.842696}
+}
+
+@ARTICLE{ml_in_the_list,
+	author={Geiselhart, Marvin and Elkelesh, Ahmed and Ebada, Moustafa and Cammerer, Sebastian and Brink, Stephan ten},
+	journal={IEEE Trans. Commun.}, 
+	title={Automorphism Ensemble Decoding of Reed–Muller Codes}, 
+	year={2021},
+	volume={69},
+	number={10},
+	pages={6424-6438},
+%	doi={10.1109/TCOMM.2021.3098798}
+}
+
+@ARTICLE{mackay99,
+  author={MacKay, D.J.C.},
+  journal={IEEE Trans. Inf. Theory}, 
+  title={Good error-correcting codes based on very sparse matrices}, 
+  year={1999},
+  volume={45},
+  number={2},
+  pages={399-431},
+%  doi={10.1109/18.748992}
+}
+
+@online{mackay,
+    author = {MacKay, David J.C.},
+    title  = {Encyclopedia of Sparse Graph Codes},
+    date   = {2023-04},
+    url    = {www.inference.org.uk/mackay/codes/data.html}
+}
+
+@book{proximal_algorithms,
+  title={Proximal algorithms},
+  author={Parikh, Neal and Boyd, Stephen and others},
+  journal={Foundations and trends{\textregistered} in Optimization},
+  volume={1},
+  number={3},
+  pages={127--239},
+  year={2014},
+  publisher={Now Publishers, Inc.}
+}
+
+@book{channel_codes_book,
+    place={Cambridge},
+    title={Channel Codes: Classical and Modern},
+%    DOI={10.1017/CBO9780511803253},
+    publisher={Cambridge University Press},
+    author={Ryan, William and Lin, Shu},
+    year={2009},
+%    url={https://d1.amobbs.com/bbs_upload782111/files_35/ourdev_604508GHLFR2.pdf}
+}
+
+@INPROCEEDINGS{adaptive_lp_decoding,
+  author={Taghavi, Mohammad H. and Siegel, Paul H.},
+  booktitle={IEEE Proc. ISIT}, 
+  title={Adaptive Linear Programming Decoding}, 
+  year={2006},
+  volume={},
+  number={},
+  pages={1374-1378},
+%  doi={10.1109/ISIT.2006.262071}
+}
+
+@INPROCEEDINGS{interior_point_decoding,
+  author={Vontobel, Pascal O.},
+  booktitle={Proc. ITA}, 
+  title={Interior-point algorithms for linear-programming decoding}, 
+  year={2008},
+  volume={},
+  number={},
+  pages={433-437},
+%  doi={10.1109/ITA.2008.4601085}
+}
+
+@article{proximal_paper,
+    title={Proximal Decoding for {LDPC} Codes},
+    author={Tadashi Wadayama and Satoshi Takabe},
+    journal={IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences},
+%    volume={advpub},
+%    pages={2022TAP0002},
+    year={2022},
+%    doi={10.1587/transfun.2022TAP0002}
+}
+
+@ARTICLE{chase_decoding,
+  author={Chase, D.},
+  journal={IEEE Trans. Inf. Theory}, 
+  title={Class of algorithms for decoding block codes with channel measurement information}, 
+  year={1972},
+ % volume={18},
+ % number={1},
+ % pages={170-182},
+ % keywords={},
+ % doi={10.1109/TIT.1972.1054746}}
+}

res/bp_20433484.csv

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+SNR,FER,BER,num_frame_errors
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+3.0, 0.0130012936610608  , 0.00128034396164675 , 201
+3.5, 0.00176298778188070 , 0.000150054320523940, 201
+4.0, 0.000267259157615091, 1.51866607463458e-05, 201
+4.5, 5.33724908622844e-05, 1.98370100658768e-06, 201
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+6.0, 1.08000000000000e-06, 2.41176470588235e-08, 108
+6.5, 3.60000000000000e-07, 8.62745098039216e-09, 36
+

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